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Datasets: (right-click & 'save target as')
1.) Genomic DNA scaffold, corrected / updated - May 2017
2.) EvidenceModeler CDS and protein sequences
3.) Trinity genome-guided + de novo transcripts (redundant) - old
3.) EvidenceModeler GFF annotation - old
4.) Protein BLAST annotations and Pfam annotation (.xlsx) - old
7.) Protein targeting report (.xlsx) - old
8.) BLAST2GO project (.b2g file) - old
9.) Phylogenetic trees and alignments - old
10.) Subset of trees and alignments containing Chlamydiae, regardless of phylogenetic position - May 2017, annotations.
12.) Transcriptome predicted proteins (TransDecoder) clustered 95% identity - May 2017
13.) Phylogenetic trees and alignments for Transcriptome predicted proteins (above) - May 2017
14.) Augustus predicted proteins (BRAKER1), corrected genome - May 2017
15.) Augustus predicted CDS (BRAKER1), corrected genome - May 2017
16.) Augustus .gtf annotations (BRAKER1), corrected genome - May 2017
17.) Phylogenetic trees and alignments for Augustus/BRAKER1 proteins above - May 2017
18.) BLASTp top hits and annotations for predicted proteins - May 2017
19.) Transcripts encoding sense + antisense ORF w/ top hits to genome scaffolds (tab 1) and augustus predicted proteins (tab 2) - May 2017
20.) Additional ORFs (with no hits to predicted proteions) derived from transcripts encoding sense and antisense peptides - May 2017

Enter query sequences here in Fasta format

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Program database(s)