Databases available for ViroBLAST search

Nucleotide sequence databases

Viroverse
Local HIV-1 sequence database in Mullins lab.

Viral genbank
Viral sequence subset of NCBI genbank. The database is updated weekly.

HIV genbank
HIV sequence subset of NCBI genbank. The database is updated weekly.

LANL HIV-1 complete genome (yyyy)
HIV-1 complete genome sequences from LANL. The year in parentheses is the publish year.

LANL HIV-1 subtype reference (yyyy)
HIV-1 subtype reference sequences from LANL. The year in parentheses is the publish year.

LANL HIV-1 consensus & ancestor (yyyy)
HIV-1 consensus and ancestral sequences from LANL. The year in parentheses is the publish year.

Vectors
Non-redundant vector database (UniVec) of NCBI.

Protein sequence databases

Viral protein
Viral protein sequence subset of NCBI genbank.

HIV protein
HIV protein sequence subset of NCBI genbank.

Human protein
Human protein sequences from NCBI.

Pan troglodytes protein
Pan troglodytes protein sequences from NCBI.

RefSeq
RefSeq protein sequences from NCBI's Reference Sequence Project.

SwissProt
Last major release of the SWISS-PROT protein sequence database (no updates).