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Datasets: (right-click & 'save target as')
1.) Genomic DNA scaffold, corrected / updated
2.) Trinity genome-guided + de novo transcripts (redundant)
3.) Transcriptome predicted proteins (TransDecoder) clustered 95% identity
4.) Phylogenetic trees and alignments for Transcriptome predicted proteins (above)
5.) Augustus predicted proteins (BRAKER1), corrected genome
6.) Augustus predicted CDS (BRAKER1), corrected genome
7.) Augustus .gtf annotations (BRAKER1), corrected genome
8.) Phylogenetic trees and alignments for Augustus/BRAKER1 proteins above
9.) BLASTp top hits and annotations for predicted proteins
10.) Transcripts encoding sense + antisense ORF w/ top hits to genome scaffolds (tab 1) and augustus predicted proteins (tab 2)
11.) Additional ORFs (with no hits to predicted proteions) derived from transcripts encoding sense and antisense peptides
12.) Time-course expression clusters, PDF
13.) Blast2GO enrichment (Fisher's exact) tests for expression clusters
14.) Expression cluster members
15.) KEGG KO terms for predicted proteins
16.) KEGG pathway expression plots

Enter query sequences here in Fasta format

Or upload sequence file in fasta format:

Program database(s)
And/or upload sequence fasta file

The query sequence is NOT filtered for low complexity regions by default.

Filter   Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Other advanced options:     

Alignment view

Descriptions    Alignments